Published on in Vol 11 (2025)
This is a member publication of University of Toronto
Preprints (earlier versions) of this paper are
available at
https://preprints.jmir.org/preprint/65984, first published
.

Journals
- Huang R, Sood T, Nelms M, Wintraub L, Leung F. Addressing the challenges of field notes in medical education: a qualitative study of resident experiences. BMC Medical Education 2025;25(1) View
- Kamihara T, Omura T, Shimizu A. Potential and Limitations of Large Language Models for Medical Literature Analysis: A Preliminary Investigation. Cureus 2025 View
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- Abumelha M, AL-Ghamdi A, Fayoumi A, Ragab M. Medical Feature Extraction from Clinical Exam Notes: Development and Evaluation of a Two-Phase Large Language Model Framework (Preprint). JMIR Medical Informatics 2025 View
- Qiu Z, Jiang A, Qi C, Gan W, Zhu L, Mou W, Zeng D, Xiao M, Chu G, Peng S, Wong H, Zhang L, Zhang H, Deng X, Cheng Q, Tang B, Wang Y, Zhang J, Lin A, Luo P. Temporal evolution of large language models (LLMs) in oncology. Journal of Translational Medicine 2025;23(1) View
- Culhane J. Use of a Novel Natural Language Processing Utility to Extract Structured Data From Free-Text Medical Notes. Cureus 2025 View
- Luo I, Graber-Naidich A, Zhang M, Kaushik R, Nieda G, Chen T, Gu B, Choi E, Ding V, Gunturkun F, Satoyoshi M, Bhat A, Lee T, Su C, Ellis-Caleo T, Henry A, Desai M, Backhus L, Lui N, Leung A, Neal J, Kurian A, Langlotz C, Wakelee H, Liang S, Khan A, Han S. Leveraging large language models to extract smoking history from clinical notes for lung cancer surveillance. npj Digital Medicine 2025;8(1) View
- May P, Greß J, Seidel C, Sommer S, Schuler M, Nokodian S, Schröder F, Jung J. Enabling Just-in-Time Clinical Oncology Analysis With Large Language Models: Feasibility and Validation Study Using Unstructured Synthetic Data. JMIR Medical Informatics 2025;13:e78332 View
- Capobianco I, Della Penna A, Mihaljevic A, Bitzer M, Eickhoff C, Stifini D. Clinical Accuracy and Safety Concerns Following GPT-5 Public Demonstration in Cancer Care. Journal of Medical Systems 2025;49(1) View
- Kim S, Lee D, Kim Y, Yoon H, Lee H. Beyond Fine-Tuning: Leveraging Domain-Aware In-Context learning with large language models for clinical named entity recognition. Journal of Biomedical Informatics 2026;174:104982 View
- Suri C, Ratre Y, Pande B, Bhaskar L, Verma H. Artificial intelligence and machine learning-driven advancements in gastrointestinal cancer: Paving the way for precision medicine. World Journal of Gastroenterology 2026;32(1) View
- Loaiza-Bonilla A, Thaker N, Tuysuz E, Yerdan S, Kurnaz S. Evaluating Multimodal LLMs for Information Extraction from Oncology Reports Requires a Clinically Curated Ground Truth—Two-Phase Evaluation of GPT-4.1 versus GPT-4.0. AI in Precision Oncology 2026;3(1):14 View
- Hu X, Feng L, Jing B, Luo L, Tan W, Li Y, Zheng X, Huang X, Lin S, Wu H, He L. Automated Tumor and Node Staging from Esophageal Cancer Endoscopic Ultrasound Reports: A Benchmark of Advanced Reasoning Models with Prompt Engineering and Cross-Lingual Evaluation. Diagnostics 2026;16(2):215 View
- Xu K, Xu Y, Shi Q. Harnessing computational power for intelligent oncology in the age of large models: Status, challenges, and prospects. Intelligent Oncology 2026;2(1):100038 View
- Wang Y, Wang Q, Xun Y, Zhou Q, Zhang H, Liu H, Qin Y, Wu M, Wang Z, Li H, Estill J, Chen Y. Managing Conflict of Interest in Clinical Practice Guidelines With Artificial Intelligence: Insights From Large Language Models and Beyond. Journal of Evidence-Based Medicine 2026;19(1) View
- Wells C, Han A, Joseph N, Varghese C, O’Grady G, Bissett I. Learning from complaints about surgical care: a large language model-assisted sequential methods analysis. BMJ Quality & Safety 2026:bmjqs-2025-019556 View
- Han C, Wang J, Zhou W, Zhou X. An Intelligent Generation Method for Building Fire Protection Maintenance Work Orders Based on Large Language Models. Fire 2026;9(2):65 View
- Laios A, Plakou G, Quaranta M, Kaufmann A, Theophilou G, Kalampokis E, Fotopoulou C. Automated extraction of ESGO operative report fields from free-text surgical notes using large language models in advanced ovarian cancer. International Journal of Gynecological Cancer 2026;36(5):104613 View
- Hou Y, Gubili J, Jain P, Lam C, Chatterjee A, Mao J. Evaluation of a RAG-Based LLM for Evidence-Based Herb and Supplement Information in Cancer Care (Preprint). JMIR Cancer 2025 View
- Xie F, Lee M, Chen W, Phan D. Converting unstructured cardiac catheterization and echocardiography reports into structured data using transformer-based language models. JAMIA Open 2026;9(2) View
- Zheng G, An T, Zuo Y, Wang S, Zhai Y. From LLMs to AI agents: a systematic benchmark for SAO structure extraction in patent analytics. Scientific Reports 2026;16(1) View
- May P, Brookman-May S, Garrahy E, von Büren J. Sequencing AI Automation and Data Interoperability in Oncology Using a Scenario-Planning Framework Coupled With Discrete-Event Simulation: Proof-of-Concept Study. Journal of Medical Internet Research 2026;28:e92642 View
- Kayira A, Elyazori H, Lybarger K, Walter F, Chelala C, Funston G. Natural Language Processing of Clinical Notes for Cancer Research and Patient Care Prior to Widespread Adoption of Generative AI: Scoping Review. JMIR AI 2026;5:e73481 View
- Tian J, Lou Q, Wang X, Xu H, Mei H, Yu Y. Large Language Models in Colorectal Cancer Care and Clinical Decision Support: Systematic Review. Journal of Medical Internet Research 2026;28:e89862 View
- Chow N, Chang H, Chen H, Lin C, Liu Y, Tseng P, Shiu L, Chu Y, Chung P, Chang K. Digital Registrar: A Schema-First Framework for Multi-Cancer Privacy-Preserving Pathology Abstraction via Local LLMs. Diagnostics 2026;16(11):1644 View
- Lim R, Nitar P, Lau K, Leong L, Tan V, Tan B, Tan E, Goh S, Hartman M, Wong F, Lim G, Li J. Retrospective Cohort Study: Extracting Coexisting Background Breast-Lesion Features from Stage I–III Invasive Breast Cancer. Cancers 2026;18(12):1965 View
- Chen S, Maddali M, Langlotz C, Bluethgen C, Chen J, Raj R. Evaluation of Large Language Models for Structured Data Extraction From Interstitial Lung Disease Clinical Notes: Comparative Study. Journal of Medical Internet Research 2026;28:e90547 View
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- Wang R, Wang J, Huang Y, Guo H, Pang J. A survey on medical multimodal retrieval-augmented generation (RAG). High-Confidence Computing 2026:100415 View
- Hong S, Gutarra M, Shah R, Demartino P, Davies S, Nemecek E, Howard D, DeSalvo A, Meyer C, Majhail N, Preussler J, Hall A, Arteaga A, Auletta J, Khera N. What population-based databases reveal about equity in access to hematopoietic cell transplant and cellular therapy. Blood Reviews 2026:101417 View
Conference Proceedings
- Tetz L, Capitaine L, Kobayashi R, Jagusch B, Nguyen T, Lux T. 2025 IEEE/ACS 22nd International Conference on Computer Systems and Applications (AICCSA). Integrating Gender-Sensitive Data into Clinical AI Systems: A Proof of Concept for Inclusive Healthcare View
- P N, Subbanna N, Thankappan K. 2025 IEEE 4th International Conference for Advancement in Technology (ICONAT). OncoTrack: Time Series Analysis of Oral Cancer Progression Using Fine-Tuned LLMs View
